Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923475.1_cds_XP_016472075.1_64346
CDS Infomation

[gene=LOC107794127] [db_xref=GeneID:107794127] [protein=probable polygalacturonase] [protein_id=XP_016472075.1] [location=join(2419..2421,2731..3063,4051..4171,4269..4443,4535..4605,4698..5407)] [gbkey=CDS]
Sequence

ATGATGGCGAAGACGGATTGGTTGCTATTAGTCCTTATGGGAGTGGTGTTTTCAAGTATA
GAGAGAGGAGAGGGAAGAAAGACAAGTGAGTTAACATACTCAGCAATAAAGTGCAGAAAG
CACAGTGCATCCATAAAAGATTTTGGAGGAATAGGAGATGGAAAAACACTCAACACAAAG
GCATTTCAGAAAGCAGTGAATCAACTGAGCCAATATGCATCAGATGGTGGAGCTCAGCTA
GTTATCCCTGCTGGTCACTGGCTCACTGCTAGTTTCAATCTTACTAGCCATTTCACTCTT
TTTCTTCACAAGGATGCTCTTCTTCTTGCTTCTCAGGAAATAAACCAGTGGCCCCTGATA
GACCCCTTACCATCCTATGGTCATGGGAGGGATGCACCAGGAGGCAGGTATATCAGTCTC
ATTTTTGGTACTAACCTCACAGATGTCATCATCACAGGTGAGAATGGGACAATAGATGGG
CAGGGTGCTGTCTGGTGGCAACAATTTCACAGGAAAAAGCTAAAATACACAAGATCTTAC
TTGATTGAACTCATGCATTCTAATAAAATTCAGATATCAAATCTAACCCTTGTCAACTCT
CCTTCTTGGAATATCCATCCCGTTTATAGCAGCAATATCATTATCCAAGGCCTCACTATT
TTAGCACCTGTAACATCCCCAAACACTGATGGAATCGACCCAGATTCTTGCACAAATATA
AGACTAGAGGACAACTACATTGTATCTGGAGATGACTGTGTAGCAGTGAAAAGTGGCTGG
GATGAATATGGTATAAAATATGGAATGCCAACAAGTCATCTGATCATCAGACGTCTCACT
TGCATTTCACCTTACAGTGCAGCAATAGCATTAGGAAGTGAAATGTCAGGCGGAATTCAA
GATGTGAGAGTTCAAGACATTATAGCCATCAACACAGAATCAGGGGTAAGGATAAAGACA
GCCGTGGGACGAGGCGGGTTCGTCAAAGATGTATATGTCAAGGGGATGAAACTGCACACC
ATAAAATGGGTATTTTGGATGACAGGTAACTATGGTTCACACGCTGACACTCACTGGGAT
CCTAAAGCCTTACCAGAGATAAAAGGGATCAATTACCGGGATGTGGTGGCTGAGAACGTG
TCAATGGCCGCCCAGCTAGAGGGGTTGTCCGGGGATCCTTTCACTGGAATCTGCATGTCC
AATGTGACAATTGGTTTAGCAAAGAAGGCCAAGAAATATCCATGGACTTGCACTAATATT
GAAGGAATTAGCAGCAGTGTGCAACCTCCACCTTGTCAGTTGCTAGCTGATCAGGGCCCA
AAGAAGAGTAGGAGGATGTGTGATTTTCCTACAGAAAGTTTACCCATAGATAACATAGAG
ATGCAAAGATGTTCTTATAGATTGAATTACTGA

Peptide Sequence

PEP ID

XP_016472075.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MMAKTDWLLLVLMGVVFSSIERGEGRKTSELTYSAIKCRKHSASIKDFGGIGDGKTLNTK
AFQKAVNQLSQYASDGGAQLVIPAGHWLTASFNLTSHFTLFLHKDALLLASQEINQWPLI
DPLPSYGHGRDAPGGRYISLIFGTNLTDVIITGENGTIDGQGAVWWQQFHRKKLKYTRSY
LIELMHSNKIQISNLTLVNSPSWNIHPVYSSNIIIQGLTILAPVTSPNTDGIDPDSCTNI
RLEDNYIVSGDDCVAVKSGWDEYGIKYGMPTSHLIIRRLTCISPYSAAIALGSEMSGGIQ
DVRVQDIIAINTESGVRIKTAVGRGGFVKDVYVKGMKLHTIKWVFWMTGNYGSHADTHWD
PKALPEIKGINYRDVVAENVSMAAQLEGLSGDPFTGICMSNVTIGLAKKAKKYPWTCTNI
EGISSSVQPPPCQLLADQGPKKSRRMCDFPTESLPIDNIEMQRCSYRLNY

Transcript Sequence

Gene sequence data has not been registered.